{"id":4928,"date":"2021-03-20T18:38:37","date_gmt":"2021-03-20T17:38:37","guid":{"rendered":"https:\/\/meddists.com\/learn\/pre-clinical\/molecular-biology\/molecular-method-for-detection-of-proteins\/solid-sample-preparation\/"},"modified":"2021-03-23T00:09:52","modified_gmt":"2021-03-22T23:09:52","slug":"solid-sample-preparation","status":"publish","type":"page","link":"https:\/\/meddists.com\/learn\/pre-clinical\/molecular-biology\/molecular-method-for-detection-of-proteins\/solid-sample-preparation\/","title":{"rendered":"Solid sample preparation"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\"><div class=\"intro\">Investigating a protein in a patient\u2019s solid sample is difficult if we have only one part of the tissue. In order to obtain the protein of interest (p53), we need to cut the tissue into small pieces, grind it, smash it in order to destroy the cell to let the protein released from there or if the tissue has a lot of connective parts like collagen we need to degrade it by collagenase treatment.<\/div><\/p>\n\n\n<span class=\"block-heading\" id=\"header_1\">\n<h2 class=\"wp-block-heading\" class=\"wp-block-heading\" class=\"title_collection title1\">Isolation cells and proteins from a tissue<\/h2>\n<\/span><span class=\"block-content\" id=\"contents_1\">\n\n\n<p class=\"wp-block-paragraph\">Tissues have connective parts like collagen and ECM components. In the case of adipose tissue from a patient, we have a lot of collagen. The first step is to get rid of the connective tissue. This process is usually done by the digestion of these connective parts by COLLAGENASE enzymes. We are adding to the freshly isolated sample a collagenase cocktail and leave it for a while with regular shaking. After the digestion process is successfully done we got an orange juice like solution, which is the sign that the collagen has been broken down by the collagenase treatment (Figure 1).<\/p>\n\n\n\n<figure class=\"wp-block-image size-large\"><a href=\"https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO.png\" target=\"_blank\" title=\"Solid sample preparation\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"589\" src=\"https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO-1024x589.png\" alt=\"\" class=\"wp-image-4960\" srcset=\"https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO-1024x589.png 1024w, https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO-300x173.png 300w, https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO-768x442.png 768w, https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO-1536x884.png 1536w, https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO.png 1600w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/a><figcaption><strong>Figure 1. Collagenase treatment of Adipose tissue.<\/strong><br>(A) Freshly collected sample from a patient. In the Tissue culture flask, the dark solution is the blood, above which the tissue of the adipocytes is orange coloured.<br>(B) In the first step we need to remove the blood from the sample<br>(C) After the removal of the blood, we wash the adipose tissue 5-10 times with phosphate-buffered saline solution (PBS)<br>(D) Collection of the washing solutions<br>(E) Washed adipose tissue<br>(F) Result of 5-7 hours of collagenase treatment with continuous shaking, resulted in an orange juice like structure.<\/figcaption><\/figure>\n\n\n\n<p class=\"wp-block-paragraph\">After the collagenase treatment we need to collect the clear cells separated from the connective tissue remnants, which means we have to centrifuge the samples. By the centrifugation we can distuinguish between the cellular components and the non cellular (ECM &amp; connective tissues) parts. By the repeating centrifugation and washing methods we can have even more clear final product. In order to have a clear adipocyte culture for example we need to wash the samples several times until the solution is transparent enough. This is the sign that the RBC-s are eliminated properly for example (Figure 2).<\/p>\n\n\n\n<figure class=\"wp-block-image size-large\"><a href=\"https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO2.png\" target=\"_blank\" title=\"Solid sample preparation\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"645\" src=\"https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO2-1024x645.png\" alt=\"\" class=\"wp-image-4961\" srcset=\"https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO2-1024x645.png 1024w, https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO2-300x189.png 300w, https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO2-768x484.png 768w, https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO2.png 1322w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/a><figcaption><strong>Figure 2. Centrifugation steps <\/strong>by which we can eliminate the unpleasant part of the tissue sample. On the right part of the picture is a transparent solution under the \u201cfat\u201d amount which means the RBC-s are eliminated.<\/figcaption><\/figure>\n\n\n\n<p class=\"wp-block-paragraph\">However we have a clear sulotion under the orange coloured fat amount it is still a lot of unneccesary components , while we need just the adipocyte population. In order to get the final clear cell population we need to continue the washing steps and the separation method. For that we need to add another \u201cshot\u201d of collagenase treatment to eliminate the remaining connective tissue parts. After the treatment works properly we can have a mixture of adipocytes (fat containing cells) and some RBC-s which stucked between them. The solution is reddish afterwards (Figure 3).<\/p>\n\n\n\n<figure class=\"wp-block-image size-large\"><a href=\"https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO3.png\" target=\"_blank\" title=\"Solid sample preparation\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"328\" src=\"https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO3-1024x328.png\" alt=\"\" class=\"wp-image-4962\" srcset=\"https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO3-1024x328.png 1024w, https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO3-300x96.png 300w, https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO3-768x246.png 768w, https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO3-1536x493.png 1536w, https:\/\/meddists.com\/learn\/wp-content\/uploads\/2021\/03\/ADIPO3.png 1584w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/a><figcaption><strong>Figure 3. Separation of the cellular components<\/strong> with centrifugation and another collagenase treatment. In the end, we can have a reddish coloured solution with a pellet at the bottom of the tube. The colour is reddish caused by the RBCs explode by the hypotonic conditions. In the pellet, we can have cells of interest in which we want to investigate the protein of ours.<\/figcaption><\/figure>\n\n\n\n<p class=\"wp-block-paragraph\">The pellet contains all of the adipocyte cells. In the next steps we need to destroy the membrane of them and lyse with another set of solutions to obtain the intracellular proteins, where the potential protein of interest could be there.<\/p>\n<\/span><div id=\"the_titles\" style=\"display:none;\"><h2 class=\"wp-block-heading\" class=\"wp-block-heading\">Isolation cells and proteins from a tissue<\/h2><\/div>","protected":false},"excerpt":{"rendered":"<p>Isolation cells and proteins from a tissue Tissues have connective parts like collagen and ECM components. In the case of adipose tissue from a patient, we have a lot of collagen. The first step is to get rid of the connective tissue. This process is usually done by the digestion of these connective parts by [&hellip;]<\/p>\n","protected":false},"author":23,"featured_media":0,"parent":2308,"menu_order":1,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-4928","page","type-page","status-publish","hentry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.8 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Solid sample preparation &#8211; Meddists<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/meddists.com\/learn\/pre-clinical\/molecular-biology\/molecular-method-for-detection-of-proteins\/solid-sample-preparation\/\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"4 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\\\/\\\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\\\/\\\/meddists.com\\\/learn\\\/pre-clinical\\\/molecular-biology\\\/molecular-method-for-detection-of-proteins\\\/solid-sample-preparation\\\/\",\"url\":\"https:\\\/\\\/meddists.com\\\/learn\\\/pre-clinical\\\/molecular-biology\\\/molecular-method-for-detection-of-proteins\\\/solid-sample-preparation\\\/\",\"name\":\"Solid sample preparation &#8211; 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